PerlMol is a collection of Perl modules for chemoinformatics and computational chemistry. It provides objects and methods for representing molecules, atoms, and bonds in Perl; doing substructure matching; and reading and writing files in various formats.

Perl  Chemoinformatics  Chemical  Atom  Ring  Bond  Bonds  Chemistry  Protein  Smiles  Molecule  Molecular  Sdf  Macromolecule  Canonical  Atoms  Structure  Molecules  Pdb  Chimera  Mol  Xyz  Perception  Midas  Computational Chemistry  Mopac  Molecular Modeling  Smarts  Mdl  Sln  Cheminformatics  Canonicalization  Sssr  Molecular Modelling  Perlmol  Perl Module  Connection Table  Z Matrix  Internal Coordinates  Molfile  Sdfile  Sybyl  Line Notation  Substrucure  Essr